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glm/test/gtx/gtx_pca.cpp
Mark Sheppard 3cb568cd37 Fix Clang 15 test build errors 
Fixes for compiler errors when building the tests using Clang 15,
including:

    * Use explicit cast to silence Wimplicit-int-float-conversion
      warning for conversion of spin count in implementation of
      glm::slerp.
    * Use GLM_FORCE_MESSAGES instead of removed GLM_MESSAGES for
      messages in glm/gtx/hash.hpp, avoiding Wundef warning.
    * Encode en dash in URL for Gram-Schmit Process wikipedia page and
      replace similar en dashes in comments with regular dashes, to
      avoid Winvalid-utf8 warnings in glm/gtx/matrix_factorisation.inl.
    * Replace degree sign symbol with text "degrees" to avoid
      Winvalid-utf8 warnings in test/gtc/gtc_quaternion.cpp.
    * When using Clang, build tests with -Wno-float-equal to silence
      Wfloat-equal warning in implementation of glm::vec<L,T,Q>::equal.
    * For performance tests in test/gtx/gtx_fast_trigonometry.cpp, add
      statement explicitly casting result to void, to silence
      Wunused-but-set-variable warnings.
    * Add newline at end of test/gtx/gtx_hash.cpp to silence
      Wnewline-eof warning.
    * Rename namespace _1aga to agarose in test/gtx/gtx_pca.cpp to
      avoid Wreserved-identifier warning.
2023-03-31 17:39:53 +01:00

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#define GLM_ENABLE_EXPERIMENTAL
#include <glm/glm.hpp>
#include <glm/gtx/pca.hpp>
#include <glm/gtc/epsilon.hpp>
#include <glm/gtx/string_cast.hpp>
#include <cstdio>
#include <vector>
#if GLM_HAS_CXX11_STL == 1
#include <random>
#endif
template<typename T>
T myEpsilon();
template<>
GLM_INLINE GLM_CONSTEXPR float myEpsilon<float>() { return 0.00001f; }
template<>
GLM_INLINE GLM_CONSTEXPR double myEpsilon<double>() { return 0.000001; }
template<glm::length_t D, typename T, glm::qualifier Q>
bool vectorEpsilonEqual(glm::vec<D, T, Q> const& a, glm::vec<D, T, Q> const& b, T epsilon)
{
for (int c = 0; c < D; ++c)
if (!glm::epsilonEqual(a[c], b[c], epsilon))
{
fprintf(stderr, "failing vectorEpsilonEqual: [%d] %lf != %lf (~%lf)\n",
c,
static_cast<double>(a[c]),
static_cast<double>(b[c]),
static_cast<double>(epsilon)
);
return false;
}
return true;
}
template<glm::length_t D, typename T, glm::qualifier Q>
bool matrixEpsilonEqual(glm::mat<D, D, T, Q> const& a, glm::mat<D, D, T, Q> const& b, T epsilon)
{
for (int c = 0; c < D; ++c)
for (int r = 0; r < D; ++r)
if (!glm::epsilonEqual(a[c][r], b[c][r], epsilon))
{
fprintf(stderr, "failing vectorEpsilonEqual: [%d][%d] %lf != %lf (~%lf)\n",
c, r,
static_cast<double>(a[c][r]),
static_cast<double>(b[c][r]),
static_cast<double>(epsilon)
);
return false;
}
return true;
}
template<typename T>
GLM_INLINE bool sameSign(T const& a, T const& b)
{
return ((a >= 0) && (b >= 0)) || ((a < 0) && (b < 0));
}
template<typename T>
T failReport(T line)
{
fprintf(stderr, "Failed in line %d\n", static_cast<int>(line));
return line;
}
// Test data: 1AGA 'agarose double helix'
// https://www.rcsb.org/structure/1aga
// The fourth coordinate is randomized
namespace agarose
{
// Fills `outTestData` with hard-coded atom positions from 1AGA
// The fourth coordinate is randomized
template<typename vec>
void fillTestData(std::vector<vec>& outTestData)
{
// x,y,z coordinates copied from RCSB PDB file of 1AGA
// w coordinate randomized with standard normal distribution
static const double _1aga[] = {
3.219, -0.637, 19.462, 2.286,
4.519, 0.024, 18.980, -0.828,
4.163, 1.425, 18.481, -0.810,
3.190, 1.341, 17.330, -0.170,
1.962, 0.991, 18.165, 0.816,
2.093, 1.952, 19.331, 0.276,
5.119, -0.701, 17.908, -0.490,
3.517, 2.147, 19.514, -0.207,
2.970, 2.609, 16.719, 0.552,
2.107, -0.398, 18.564, 0.403,
2.847, 2.618, 15.335, 0.315,
1.457, 3.124, 14.979, 0.683,
1.316, 3.291, 13.473, 0.446,
2.447, 4.155, 12.931, 1.324,
3.795, 3.614, 13.394, 0.112,
4.956, 4.494, 12.982, 0.253,
0.483, 2.217, 15.479, 1.316,
0.021, 3.962, 13.166, 1.522,
2.311, 5.497, 13.395, 0.248,
3.830, 3.522, 14.827, 0.591,
5.150, 4.461, 11.576, 0.635,
-1.057, 3.106, 13.132, 0.191,
-2.280, 3.902, 12.650, 1.135,
-3.316, 2.893, 12.151, 0.794,
-2.756, 2.092, 11.000, 0.720,
-1.839, 1.204, 11.835, -1.172,
-2.737, 0.837, 13.001, -0.313,
-1.952, 4.784, 11.578, 2.082,
-3.617, 1.972, 13.184, 0.653,
-3.744, 1.267, 10.389, -0.413,
-0.709, 2.024, 12.234, -1.747,
-3.690, 1.156, 9.005, -1.275,
-3.434, -0.300, 8.649, 0.441,
-3.508, -0.506, 7.143, 0.237,
-4.822, 0.042, 6.601, -2.856,
-5.027, 1.480, 7.064, 0.985,
-6.370, 2.045, 6.652, 0.915,
-2.162, -0.690, 9.149, 1.100,
-3.442, -1.963, 6.836, -0.081,
-5.916, -0.747, 7.065, -2.345,
-4.965, 1.556, 8.497, 0.504,
-6.439, 2.230, 5.246, 1.451,
-2.161, -2.469, 6.802, -1.171,
-2.239, -3.925, 6.320, -1.434,
-0.847, -4.318, 5.821, 0.098,
-0.434, -3.433, 4.670, -1.446,
-0.123, -2.195, 5.505, 0.182,
0.644, -2.789, 6.671, 0.865,
-3.167, -4.083, 5.248, -0.098,
0.101, -4.119, 6.854, -0.001,
0.775, -3.876, 4.059, 1.061,
-1.398, -1.625, 5.904, 0.230,
0.844, -3.774, 2.675, 1.313,
1.977, -2.824, 2.319, -0.112,
2.192, -2.785, 0.813, -0.981,
2.375, -4.197, 0.271, -0.355,
1.232, -5.093, 0.734, 0.632,
1.414, -6.539, 0.322, 0.576,
1.678, -1.527, 2.819, -1.187,
3.421, -1.999, 0.496, -1.770,
3.605, -4.750, 0.735, 1.099,
1.135, -5.078, 2.167, 0.854,
1.289, -6.691, -1.084, -0.487,
-1.057, 3.106, 22.602, -1.297,
-2.280, 3.902, 22.120, 0.376,
-3.316, 2.893, 21.621, 0.932,
-2.756, 2.092, 20.470, 1.680,
-1.839, 1.204, 21.305, 0.615,
-2.737, 0.837, 22.471, 0.899,
-1.952, 4.784, 21.048, -0.521,
-3.617, 1.972, 22.654, 0.133,
-3.744, 1.267, 19.859, 0.081,
-0.709, 2.024, 21.704, 1.420,
-3.690, 1.156, 18.475, -0.850,
-3.434, -0.300, 18.119, -0.249,
-3.508, -0.506, 16.613, 1.434,
-4.822, 0.042, 16.071, -2.466,
-5.027, 1.480, 16.534, -1.045,
-6.370, 2.045, 16.122, 1.707,
-2.162, -0.690, 18.619, -2.023,
-3.442, -1.963, 16.336, -0.304,
-5.916, -0.747, 16.535, 0.979,
-4.965, 1.556, 17.967, -1.165,
-6.439, 2.230, 14.716, 0.929,
-2.161, -2.469, 16.302, -0.234,
-2.239, -3.925, 15.820, -0.228,
-0.847, -4.318, 15.321, 1.844,
-0.434, -3.433, 14.170, 1.132,
-0.123, -2.195, 15.005, 0.211,
0.644, -2.789, 16.171, -0.632,
-3.167, -4.083, 14.748, -0.519,
0.101, -4.119, 16.354, 0.173,
0.775, -3.876, 13.559, 1.243,
-1.398, -1.625, 15.404, -0.187,
0.844, -3.774, 12.175, -1.332,
1.977, -2.824, 11.819, -1.616,
2.192, -2.785, 10.313, 1.320,
2.375, -4.197, 9.771, 0.237,
1.232, -5.093, 10.234, 0.851,
1.414, -6.539, 9.822, 1.816,
1.678, -1.527, 12.319, -1.657,
3.421, -1.999, 10.036, 1.559,
3.605, -4.750, 10.235, 0.831,
1.135, -5.078, 11.667, 0.060,
1.289, -6.691, 8.416, 1.066,
3.219, -0.637, 10.002, 2.111,
4.519, 0.024, 9.520, -0.874,
4.163, 1.425, 9.021, -1.012,
3.190, 1.341, 7.870, -0.250,
1.962, 0.991, 8.705, -1.359,
2.093, 1.952, 9.871, -0.126,
5.119, -0.701, 8.448, 0.995,
3.517, 2.147, 10.054, 0.941,
2.970, 2.609, 7.259, -0.562,
2.107, -0.398, 9.104, -0.038,
2.847, 2.618, 5.875, 0.398,
1.457, 3.124, 5.519, 0.481,
1.316, 3.291, 4.013, -0.187,
2.447, 4.155, 3.471, -0.429,
3.795, 3.614, 3.934, -0.432,
4.956, 4.494, 3.522, -0.788,
0.483, 2.217, 6.019, -0.923,
0.021, 3.962, 3.636, -0.316,
2.311, 5.497, 3.935, -1.917,
3.830, 3.522, 5.367, -0.302,
5.150, 4.461, 2.116, -1.615
};
static const glm::length_t _1agaSize = sizeof(_1aga) / (4 * sizeof(double));
outTestData.resize(_1agaSize);
for(glm::length_t i = 0; i < _1agaSize; ++i)
for(glm::length_t d = 0; d < static_cast<glm::length_t>(vec::length()); ++d)
outTestData[i][d] = static_cast<typename vec::value_type>(_1aga[i * 4 + d]);
}
// All reference values computed separately using symbolic precision
// https://github.com/sgrottel/exp-pca-precision
// This applies to all functions named: `agarose::expected*()`
GLM_INLINE glm::dmat4 const& expectedCovarData()
{
static const glm::dmat4 covar4x4d(
9.62434068027210898322, -0.00006657369614512471, -4.29321376568405099761, 0.01879374187452758846,
-0.00006657369614512471, 9.62443937868480681175, 5.35113872637944076871, -0.11569259145880574080,
-4.29321376568405099761, 5.35113872637944076871, 35.62848549634668415820, 0.90874239254220201545,
0.01879374187452758846, -0.11569259145880574080, 0.90874239254220201545, 1.09705971856890904803
);
return covar4x4d;
}
template<glm::length_t D>
GLM_INLINE glm::vec<D, double, glm::defaultp> const& expectedEigenvalues();
template<>
GLM_INLINE glm::dvec2 const& expectedEigenvalues<2>()
{
static const glm::dvec2 evals2(
9.62447289926297399961763301774251330057894539467032275382255,
9.62430715969394210015560961264297422776572580714373620309355
);
return evals2;
}
template<>
GLM_INLINE glm::dvec3 const& expectedEigenvalues<3>()
{
static const glm::dvec3 evals3(
37.3274494274683425233695502581182052836449738530676689472257,
9.62431434161498823505729817436585077939509766554969096873168,
7.92550178622027216422369326567668971675332732240052872097887
);
return evals3;
}
template<>
GLM_INLINE glm::dvec4 const& expectedEigenvalues<4>()
{
static const glm::dvec4 evals4(
37.3477389918792213596879452204499702406947817221901007885630,
9.62470688921105696017807313860277172063600080413412567999700,
7.94017075281634999342344275928070533134615133171969063657713,
1.06170863996588365446060186982477896078741484440002343404155
);
return evals4;
}
template<glm::length_t D>
GLM_INLINE glm::mat<D, D, double, glm::defaultp> const& expectedEigenvectors();
template<>
GLM_INLINE glm::dmat2 const& expectedEigenvectors<2>()
{
static const glm::dmat2 evecs2(
glm::dvec2(
-0.503510847492551904906870957742619139443409162857537237123308,
1
),
glm::dvec2(
1.98605453086051402895741763848787613048533838388005162794043,
1
)
);
return evecs2;
}
template<>
GLM_INLINE glm::dmat3 const& expectedEigenvectors<3>()
{
static const glm::dmat3 evecs3(
glm::dvec3(
-0.154972738414395866005286433008304444294405085038689821864654,
0.193161285869815165989799191097521722568079378840201629578695,
1
),
glm::dvec3(
-158565.112775416943154745839952575022429933119522746586149868,
-127221.506282351944358932458687410410814983610301927832439675,
1
),
glm::dvec3(
2.52702248596556806145700361724323960543858113426446460406536,
-3.14959802931313870497377546974185300816008580801457419079412,
1
)
);
return evecs3;
}
template<>
GLM_INLINE glm::dmat4 const& expectedEigenvectors<4>()
{
static const glm::dmat4 evecs4(
glm::dvec4(
-6.35322390281037045217295803597357821705371650876122113027264,
7.91546394153385394517767054617789939529794642646629201212056,
41.0301543819240679808549819457450130787045236815736490549663,
1
),
glm::dvec4(
-114.622418941087829756565311692197154422302604224781253861297,
-92.2070185807065289900871215218752013659402949497379896153118,
0.0155846091025912430932734548933329458404665760587569100867246,
1
),
glm::dvec4(
13.1771887761559019483954743159026938257325190511642952175789,
-16.3688257459634877666638419310116970616615816436949741766895,
5.17386502341472097227408249233288958059579189051394773143190,
1
),
glm::dvec4(
-0.0192777078948229800494895064532553117703859768210647632969276,
0.0348034950916108873629241563077465542944938906271231198634442,
-0.0340715609308469289267379681032545422644143611273049912226126,
1
)
);
return evecs4;
}
} // namespace agarose
// Compute center of gravity
template<typename vec>
vec computeCenter(const std::vector<vec>& testData)
{
double c[4];
std::fill(c, c + vec::length(), 0.0);
typename std::vector<vec>::const_iterator e = testData.end();
for(typename std::vector<vec>::const_iterator i = testData.begin(); i != e; ++i)
for(glm::length_t d = 0; d < static_cast<glm::length_t>(vec::length()); ++d)
c[d] += static_cast<double>((*i)[d]);
vec cVec(0);
for(glm::length_t d = 0; d < static_cast<glm::length_t>(vec::length()); ++d)
cVec[d] = static_cast<typename vec::value_type>(c[d] / static_cast<double>(testData.size()));
return cVec;
}
// Test sorting of Eigenvalue&Eigenvector lists. Use exhaustive search.
template<glm::length_t D, typename T, glm::qualifier Q>
int testEigenvalueSort()
{
// Test input data: four arbitrary values
static const glm::vec<D, T, Q> refVal(
glm::vec<4, T, Q>(
10, 8, 6, 4
)
);
// Test input data: four arbitrary vectors, which can be matched to the above values
static const glm::mat<D, D, T, Q> refVec(
glm::mat<4, 4, T, Q>(
10, 20, 5, 40,
8, 16, 4, 32,
6, 12, 3, 24,
4, 8, 2, 16
)
);
// Permutations of test input data for exhaustive check, based on `D` (1 <= D <= 4)
static const int permutationCount[] = {
0,
1,
2,
6,
24
};
// The permutations t perform, based on `D` (1 <= D <= 4)
static const glm::ivec4 permutation[] = {
glm::ivec4(0, 1, 2, 3),
glm::ivec4(1, 0, 2, 3), // last for D = 2
glm::ivec4(0, 2, 1, 3),
glm::ivec4(1, 2, 0, 3),
glm::ivec4(2, 0, 1, 3),
glm::ivec4(2, 1, 0, 3), // last for D = 3
glm::ivec4(0, 1, 3, 2),
glm::ivec4(1, 0, 3, 2),
glm::ivec4(0, 2, 3, 1),
glm::ivec4(1, 2, 3, 0),
glm::ivec4(2, 0, 3, 1),
glm::ivec4(2, 1, 3, 0),
glm::ivec4(0, 3, 1, 2),
glm::ivec4(1, 3, 0, 2),
glm::ivec4(0, 3, 2, 1),
glm::ivec4(1, 3, 2, 0),
glm::ivec4(2, 3, 0, 1),
glm::ivec4(2, 3, 1, 0),
glm::ivec4(3, 0, 1, 2),
glm::ivec4(3, 1, 0, 2),
glm::ivec4(3, 0, 2, 1),
glm::ivec4(3, 1, 2, 0),
glm::ivec4(3, 2, 0, 1),
glm::ivec4(3, 2, 1, 0) // last for D = 4
};
// initial sanity check
if(!vectorEpsilonEqual(refVal, refVal, myEpsilon<T>()))
return failReport(__LINE__);
if(!matrixEpsilonEqual(refVec, refVec, myEpsilon<T>()))
return failReport(__LINE__);
// Exhaustive search through all permutations
for(int p = 0; p < permutationCount[D]; ++p)
{
glm::vec<D, T, Q> testVal;
glm::mat<D, D, T, Q> testVec;
for(int i = 0; i < D; ++i)
{
testVal[i] = refVal[permutation[p][i]];
testVec[i] = refVec[permutation[p][i]];
}
glm::sortEigenvalues(testVal, testVec);
if (!vectorEpsilonEqual(testVal, refVal, myEpsilon<T>()))
return failReport(__LINE__);
if (!matrixEpsilonEqual(testVec, refVec, myEpsilon<T>()))
return failReport(__LINE__);
}
return 0;
}
// Test covariance matrix creation functions
template<glm::length_t D, typename T, glm::qualifier Q>
int testCovar(
#if GLM_HAS_CXX11_STL == 1
glm::length_t dataSize, unsigned int randomEngineSeed
#else // GLM_HAS_CXX11_STL == 1
glm::length_t, unsigned int
#endif // GLM_HAS_CXX11_STL == 1
)
{
typedef glm::vec<D, T, Q> vec;
typedef glm::mat<D, D, T, Q> mat;
// #1: test expected result with fixed data set
std::vector<vec> testData;
agarose::fillTestData(testData);
// compute center of gravity
vec center = computeCenter(testData);
mat covarMat = glm::computeCovarianceMatrix(testData.data(), testData.size(), center);
if(!matrixEpsilonEqual(covarMat, mat(agarose::expectedCovarData()), myEpsilon<T>()))
{
fprintf(stderr, "Reconstructed covarMat:\n%s\n", glm::to_string(covarMat).c_str());
return failReport(__LINE__);
}
// #2: test function variant consitency with random data
#if GLM_HAS_CXX11_STL == 1
std::default_random_engine rndEng(randomEngineSeed);
std::normal_distribution<T> normalDist;
testData.resize(dataSize);
// some common offset of all data
T offset[D];
for(glm::length_t d = 0; d < D; ++d)
offset[d] = normalDist(rndEng);
// init data
for(glm::length_t i = 0; i < dataSize; ++i)
for(glm::length_t d = 0; d < D; ++d)
testData[i][d] = offset[d] + normalDist(rndEng);
center = computeCenter(testData);
std::vector<vec> centeredTestData;
centeredTestData.reserve(testData.size());
typename std::vector<vec>::const_iterator e = testData.end();
for(typename std::vector<vec>::const_iterator i = testData.begin(); i != e; ++i)
centeredTestData.push_back((*i) - center);
mat c1 = glm::computeCovarianceMatrix(centeredTestData.data(), centeredTestData.size());
mat c2 = glm::computeCovarianceMatrix<D, T, Q>(centeredTestData.begin(), centeredTestData.end());
mat c3 = glm::computeCovarianceMatrix(testData.data(), testData.size(), center);
mat c4 = glm::computeCovarianceMatrix<D, T, Q>(testData.rbegin(), testData.rend(), center);
if(!matrixEpsilonEqual(c1, c2, myEpsilon<T>()))
return failReport(__LINE__);
if(!matrixEpsilonEqual(c1, c3, myEpsilon<T>()))
return failReport(__LINE__);
if(!matrixEpsilonEqual(c1, c4, myEpsilon<T>()))
return failReport(__LINE__);
#endif // GLM_HAS_CXX11_STL == 1
return 0;
}
// Computes eigenvalues and eigenvectors from well-known covariance matrix
template<glm::length_t D, typename T, glm::qualifier Q>
int testEigenvectors(T epsilon)
{
typedef glm::vec<D, T, Q> vec;
typedef glm::mat<D, D, T, Q> mat;
// test expected result with fixed data set
std::vector<vec> testData;
mat covarMat(agarose::expectedCovarData());
vec eigenvalues;
mat eigenvectors;
unsigned int c = glm::findEigenvaluesSymReal(covarMat, eigenvalues, eigenvectors);
if(c != D)
return failReport(__LINE__);
glm::sortEigenvalues(eigenvalues, eigenvectors);
if (!vectorEpsilonEqual(eigenvalues, vec(agarose::expectedEigenvalues<D>()), epsilon))
return failReport(__LINE__);
for (int i = 0; i < D; ++i)
{
vec act = glm::normalize(eigenvectors[i]);
vec exp = glm::normalize(agarose::expectedEigenvectors<D>()[i]);
if (!sameSign(act[0], exp[0])) exp = -exp;
if (!vectorEpsilonEqual(act, exp, epsilon))
return failReport(__LINE__);
}
return 0;
}
// A simple small smoke test:
// - a uniformly sampled block
// - reconstruct main axes
// - check order of eigenvalues equals order of extends of block in direction of main axes
int smokeTest()
{
using glm::vec3;
using glm::mat3;
std::vector<vec3> pts;
pts.reserve(11 * 15 * 7);
for(int x = -5; x <= 5; ++x)
for(int y = -7; y <= 7; ++y)
for(int z = -3; z <= 3; ++z)
pts.push_back(vec3(x, y, z));
mat3 covar = glm::computeCovarianceMatrix(pts.data(), pts.size());
mat3 eVec;
vec3 eVal;
int eCnt = glm::findEigenvaluesSymReal(covar, eVal, eVec);
if(eCnt != 3)
return failReport(__LINE__);
// sort eVec by decending eVal
if(eVal[0] < eVal[1])
{
std::swap(eVal[0], eVal[1]);
std::swap(eVec[0], eVec[1]);
}
if(eVal[0] < eVal[2])
{
std::swap(eVal[0], eVal[2]);
std::swap(eVec[0], eVec[2]);
}
if(eVal[1] < eVal[2])
{
std::swap(eVal[1], eVal[2]);
std::swap(eVec[1], eVec[2]);
}
if(!vectorEpsilonEqual(glm::abs(eVec[0]), vec3(0, 1, 0), myEpsilon<float>()))
return failReport(__LINE__);
if(!vectorEpsilonEqual(glm::abs(eVec[1]), vec3(1, 0, 0), myEpsilon<float>()))
return failReport(__LINE__);
if(!vectorEpsilonEqual(glm::abs(eVec[2]), vec3(0, 0, 1), myEpsilon<float>()))
return failReport(__LINE__);
return 0;
}
#if GLM_HAS_CXX11_STL == 1
int rndTest(unsigned int randomEngineSeed)
{
std::default_random_engine rndEng(randomEngineSeed);
std::normal_distribution<double> normalDist;
// construct orthonormal system
glm::dvec3 x(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
double l = glm::length(x);
while(l < myEpsilon<double>())
x = glm::dvec3(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
x = glm::normalize(x);
glm::dvec3 y(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
l = glm::length(y);
while(l < myEpsilon<double>())
y = glm::dvec3(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
while(glm::abs(glm::dot(x, y)) < myEpsilon<double>())
{
y = glm::dvec3(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
while(l < myEpsilon<double>())
y = glm::dvec3(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
}
y = glm::normalize(y);
glm::dvec3 z = glm::normalize(glm::cross(x, y));
y = glm::normalize(glm::cross(z, x));
// generate input point data
std::vector<glm::dvec3> ptData;
static const int pattern[] = {
8, 0, 0,
4, 1, 2,
0, 2, 0,
0, 0, 4
};
glm::dvec3 offset(normalDist(rndEng), normalDist(rndEng), normalDist(rndEng));
for(int p = 0; p < 4; ++p)
for(int xs = 1; xs >= -1; xs -= 2)
for(int ys = 1; ys >= -1; ys -= 2)
for(int zs = 1; zs >= -1; zs -= 2)
ptData.push_back(
offset
+ x * static_cast<double>(pattern[p * 3 + 0] * xs)
+ y * static_cast<double>(pattern[p * 3 + 1] * ys)
+ z * static_cast<double>(pattern[p * 3 + 2] * zs));
// perform PCA:
glm::dvec3 center = computeCenter(ptData);
glm::dmat3 covarMat = glm::computeCovarianceMatrix(ptData.data(), ptData.size(), center);
glm::dvec3 evals;
glm::dmat3 evecs;
int evcnt = glm::findEigenvaluesSymReal(covarMat, evals, evecs);
if(evcnt != 3)
return failReport(__LINE__);
glm::sortEigenvalues(evals, evecs);
if (!sameSign(evecs[0][0], x[0])) evecs[0] = -evecs[0];
if(!vectorEpsilonEqual(x, evecs[0], myEpsilon<double>()))
return failReport(__LINE__);
if (!sameSign(evecs[2][0], y[0])) evecs[2] = -evecs[2];
if (!vectorEpsilonEqual(y, evecs[2], myEpsilon<double>()))
return failReport(__LINE__);
if (!sameSign(evecs[1][0], z[0])) evecs[1] = -evecs[1];
if (!vectorEpsilonEqual(z, evecs[1], myEpsilon<double>()))
return failReport(__LINE__);
return 0;
}
#endif // GLM_HAS_CXX11_STL == 1
int main()
{
int error(0);
// A small smoke test to fail early with most problems
if(smokeTest())
return failReport(__LINE__);
// test sorting utility.
if(testEigenvalueSort<2, float, glm::defaultp>() != 0)
error = failReport(__LINE__);
if(testEigenvalueSort<2, double, glm::defaultp>() != 0)
error = failReport(__LINE__);
if(testEigenvalueSort<3, float, glm::defaultp>() != 0)
error = failReport(__LINE__);
if(testEigenvalueSort<3, double, glm::defaultp>() != 0)
error = failReport(__LINE__);
if(testEigenvalueSort<4, float, glm::defaultp>() != 0)
error = failReport(__LINE__);
if(testEigenvalueSort<4, double, glm::defaultp>() != 0)
error = failReport(__LINE__);
if (error != 0)
return error;
// Note: the random engine uses a fixed seed to create consistent and reproducible test data
// test covariance matrix computation from different data sources
if(testCovar<2, float, glm::defaultp>(100, 12345) != 0)
error = failReport(__LINE__);
if(testCovar<2, double, glm::defaultp>(100, 42) != 0)
error = failReport(__LINE__);
if(testCovar<3, float, glm::defaultp>(100, 2021) != 0)
error = failReport(__LINE__);
if(testCovar<3, double, glm::defaultp>(100, 815) != 0)
error = failReport(__LINE__);
if(testCovar<4, float, glm::defaultp>(100, 3141) != 0)
error = failReport(__LINE__);
if(testCovar<4, double, glm::defaultp>(100, 174) != 0)
error = failReport(__LINE__);
if (error != 0)
return error;
// test PCA eigen vector reconstruction
// Expected epsilon precision evaluated separately:
// https://github.com/sgrottel/exp-pca-precision
if(testEigenvectors<2, float, glm::defaultp>(0.002f) != 0)
error = failReport(__LINE__);
if(testEigenvectors<2, double, glm::defaultp>(0.00000000001) != 0)
error = failReport(__LINE__);
if(testEigenvectors<3, float, glm::defaultp>(0.00001f) != 0)
error = failReport(__LINE__);
if(testEigenvectors<3, double, glm::defaultp>(0.0000000001) != 0)
error = failReport(__LINE__);
if(testEigenvectors<4, float, glm::defaultp>(0.0001f) != 0)
error = failReport(__LINE__);
if(testEigenvectors<4, double, glm::defaultp>(0.0000001) != 0)
error = failReport(__LINE__);
if(error != 0)
return error;
// Final tests with randomized data
#if GLM_HAS_CXX11_STL == 1
if(rndTest(12345) != 0)
error = failReport(__LINE__);
if(rndTest(42) != 0)
error = failReport(__LINE__);
if (error != 0)
return error;
#endif // GLM_HAS_CXX11_STL == 1
return error;
}
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